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Seeing live animal exhibits can be a powerful experience, but do they change our behaviors?

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Imagine you’re at the San Diego Zoo Safari Park cheetah run. You hear the sounds of awe and wonder as the cheetah demonstrates its amazing speed. The zookeeper tells you more about the cheetah and its ecosystem – an ecosystem that is being negatively impacted by humans. You walk away with tangible ways that you can do your part to reduce your impact – recycling, using less plastic. But when you exit the zoo gates and enter back into the hustle and bustle of life, do you actually make those changes?

Nicolette and Ebony, the raven, at Moorpark College in 2007.

Working under the advisership of Dr. Shawn Rowe in OSU’s College of Education, Nicolette Canzoneri is passionately pursing a Master of Science degree in Environmental Sciences with research centered around the idea of free-choice learning – or, the education that happens outside of a formal school environment. The menagerie of animals that zoos and aquariums have historically been known for has transitioned in recent years to conservation efforts. Instead of a spectacle, the animals – often rescued and unable to be re-entered into their natural environment – act as ambassadors for their ecosystems. This summer, Nicolette will be conducting a three-part project to get to the heart of human behavior changes based on interactions with live animal exhibits at zoos and aquariums.

First, Nicolette will be interviewing education directors and animal care supervisors to understand how the education programs are designed to target pro-environmental behavior. She will then observe the programs to determine the degree to which they align with the intended educational and behavioral goals. Despite the nuances of evaluation, Nicolette then plans to discover the if, how and why of evaluations being used to determine effectiveness of these educational programs. Ultimately, she hopes that her research can help to fill the knowledge gaps between theories and principles in applied behavioral studies and their implementation in free-choice learning.

Nicolette with her Animal Behavior students at Moorpark College in 2015.

Nicolette brings a wealth of experience in animal training and applied behavioral psychology to her research. As a teenager Nicolette knew that she wanted to work with animals, but it wasn’t until she found herself watching the Animal Planet reality TV show Moorpark 24/7 that she realized animal training was part of her calling. Nicolette went on to pursue her dream by obtaining her Exotic Animal Training & Management degree at the prestigious Moorpark College near Los Angeles, CA. Through the twists and turns of her career, Nicolette has since obtained a bachelor’s degree in Applied Behavioral Analysis at California State University, Sacramento and volunteered, interned, and worked in some interesting places along the way including as a dog trainer in Austria, an animal trainer at the Playboy Mansion, and most recently training dolphins for reconnaissance for the United States Navy.

Nicolette with her two dogs in San Diego, 2016.

Join us on Sunday, June 17 at 7 PM on KBVR Corvallis 88.7 FM or stream live to dive deeper into Nicolette’s free-choice learning research and journey to graduate school.

The post Seeing live animal exhibits can be a powerful experience, but do they change our behaviors? appeared first on Inspiration Dissemination.


Using sediment cores to model climate conditions

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In the lab of Andreas Schmittner in the College of Earth, Ocean, and Atmospheric Sciences, recently-graduated PhD student Juan Muglia has been developing a climate model to understand ocean current circulation, carbon cycling, and ocean biogeochemistry during the last ice age, focusing on the Southern Ocean surrounding Antarctica.

Juan has developed a climate model using data gathered from sediment cores, which are samples from the ocean floor that provide researchers with a glimpse into the elemental and organic composition of the ocean at different points in time. Scientists can acquire insight into the characteristics of the Earth’s past climate by analyzing the geologic record spanning thousands of years. Modeling the conditions of the last ice age, which occurred 20,000 years ago, allows researchers to better understand how the Earth responds to glacial and interglacial cycles, prompting the transition between cold and warm phases (we are currently in a warm interglacial period).

The process of generating an accurate climate model consists of tuning parameters embedded in the physics equations and fortran code of the model, to reproduce characteristics directly observable in modern times. If researchers can validate their model by reproducing directly observable characteristics, the model can then be used to investigate the climate at points in time beyond our direct observational capacity.

Since it’s not possible to directly measure temperature or nutrient composition of the ocean during the last ice age, Juan uses an indirect signature that serves as a proxy for direct measurement. Three isotopic sediment tracers, including 15Nitrogen, 14Carbon, and 13Carbon, are incorporated into Juan’s climate model as proxies for biological productivity and current circulation in the ocean. Investigating changes in the elemental composition of the ocean, also known as biogeochemistry, is important for understanding how climate and biology have transformed over thousands of years. The ocean serves as an enormous reservoir of carbon, and much more carbon is sequestered in the ocean than in the atmosphere. The exchange of carbon dioxide at the interface of the ocean and atmosphere is important for understanding how carbon dioxide has and will continue to impact pH, ocean currents, and biological productivity of the ocean.

Even as a kid, Juan dreamed of becoming an oceanographer. He grew up near the ocean in Argentina, surrounded by scientists; his mom was a marine botanist and his dad is a geologist. During his undergraduate studies, he majored in physics with the goal of eventually becoming a physical oceanographer, and his undergraduate thesis consisted of building fortran code for a statistical physics project. After finishing his post-doctoral studies at OSU, Juan plans to return to his hometown in Argentina, where he hopes to develop a model specific to the Argentinian climate.

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Project CHOMPIN: Parrotfish, nutrients, and the coral microbiome

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CHOMPIN comic.

Ecology is the study of the relationships among organisms and the relationships of organisms to their physical surroundings. The interactions of organisms can be described as a complex web with many junctions or relationships, and a single ecologist may focus on one or many relationships in a community or ecosystem. Our guest this week, Rebecca (Becca) Maher PhD student in the Department of Microbiology, is interested in the effect of environmental stressors on the coral microbiome. Let’s break this down by interaction:

  • Beneficial algae, bacteria, and viruses interact with coral by living in coral tissue and forming the coral microbiome
  • Corals interact with other organisms in the coral reef ecosystem, such as parrot fish
  • Corals are affected by their surrounding environment: water temperature, water nutrients, and pollution

Becca at the Newport aquarium for Scientific Diver Training through Oregon State University.

You may be familiar with coral bleaching and coral reef decline from our past episodes. Corals form a mutualistic relationship (both organisms benefit) with algae, where algae take shelter within coral tissue and provide the coral with food from photosynthesis. It is well known that high temperatures lead to coral bleaching, or a shift in the coral microbiome resulting from the loss of beneficial algae that live within the coral. Coral bleaching is often fatal.

Becca is interested in other aspects of the coral microbiome, such as differences in the symbiotic bacterial communities brought about by nutrient enrichment from agricultural run-off and overfishing. Do corals in nutrient rich water have a different microbiome than corals in nutrient poor water? Do corals in highly fished areas have a different microbiome than corals in fish-rich areas? In overfished areas, predatory fish (e.g. parrotfish) may bite coral (hence Project CHOMPIN), and so how does the coral microbiome respond after wounding by parrotfish?

Becca diving at the Flower Garden Banks National Marine Sanctuary in the Northwest Gulf of Mexico for her undergraduate thesis at Rice University.

These questions are relevant for our knowledge of environmental factors that threaten coral reef ecosystems. Corals are in decline globally and with them are the high diversity of marine species that gain shelter and substrate from the coral reef. The information gained from Becca’s research may be informative for policy makers concerned with agricultural practices near marine areas and fishing regulations.  Rebecca is traveling to Morrea, French Polynesia this August to set up her field and laboratory experiments at the Gump Biological Research Station.

This upcoming trip is highly anticipated for Becca, who has been pursuing research in marine ecosystems since her time at Rice University. After working with her undergraduate mentor Adrienne Correa at Rice, Becca’s general focus on Ecology shifted to a focus on Marine Ecology. For Becca, her project at Oregon State in the Vega Thurber Lab is a harmonious mix of field work, high-level experimental design, bioinformatics, and statistics—a nice capstone for a Marine Ecologist with aspirations for future research.

Hear more about Becca’s work with corals the Sunday at 7 PM on KBVR Corvallis 88.7FM. Not a local listener? Stream our broadcast live.

The post Project CHOMPIN: Parrotfish, nutrients, and the coral microbiome appeared first on Inspiration Dissemination.

Ways and Means: Attitudes Toward Methods of Restoring American Chestnut Trees

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“The Christmas Song” or “Chestnuts Roasting on an Open Fire” by Bob Wells and Mel Tormé is an iconic song in American culture, but most Americans will never experience a chestnut roast (at least not with American chestnuts).

A mighty blight

The American chestnut was a widespread North American native tree that covered nearly 200,000 miles of Appalachian forest. In 1904, the American chestnut trees in the Bronx Zoo were dying from a then unknown disease, Chestnut Blight. In the next forty years, Chestnut Blight spread across the estimated 4 billion American chestnut trees. Now American Chestnut trees are seen only as giant stumps, juveniles never reaching maturity, and rarely, adult fruit-bearing trees.

Since the decline of the American chestnut, Appalachian forests have changed. Chestnuts have been replaced by oaks, and it is likely that many organisms that relied on the chestnut trees for food or shelter have had to adapt to new conditions or have been displaced. The loss of the chestnut also led to the loss of financial income for many Appalachian people. In addition to chestnuts as a food source, the American chestnut provided decay resistant timber and tannins for tanning hide. The American chestnut and its decline is remembered through oral and written history. Members of older generations from Appalachia tell stories of enormous trees and later forests of white wooden chestnut skeletons.

Restoring the chestnut

Josh skiing in the mountains of Big Sky, Montana.

The restoration of the chestnut is an active project that faces many challenges. First, few Americans have seen an American chestnut tree, and few are familiar with their decline via Chestnut Blight. Since the restoration of the American chestnut would require policy changes and action across 200,000 miles, spanning multiple state governments, it is necessary to assess the extent the public might disfavor or favor this restoration. Our guest this week,Josh Petit from Forest Ecosystems and Society, is seeking to understand the attitudes of Americans toward the chestnut restoration. In particular, Josh is surveying a sample of the US population to compare attitudes toward a controversial method of chestnut restoration,  the use of genetic engineering.

Ways and Means

You may be familiar with genetic engineering to modify the genome of an organism to achieve a specific goal. Many of the crops we eat have in some way been modified to aid harvest, growth, and/or resistance to pests and disease. The methods for restoring the American chestnut are:

  • Selective breeding with related, blight-resistant Asian chestnuts
  • Modifying the genome of American chestnuts with Asian or other related chestnut genes (cisgenics)
  • Modifying the genome of American chestnuts with foreign genes or genes from wheat (transgenics)

Josh conducting research during a study abroad program in tropical North Queensland, Australia.

It is important to assess the attitudes of the public to transgenics because the introduction of  genes from wheat has been the most successful method at enhancing resistance toward chestnut blight. Recently, negative media has led to the misunderstanding that genetically modified organisms (GMOs) have adverse effects on consumers (humans) and ecosystems. However, these claims are not based in sound science and have been refuted. Although GMOs are being supported as alternatives to crop and forest species extinction, ultimately chestnut restoration relies on majority vote in favor or against a specific strategy. Thus, assessing attitudes toward restoration methods is tantamount to restoration efforts.

The Guy for the Job

A native of Ohio, Josh Petit attended Xavier University and majored in Political Science. He credits a Semester at Sea for broadening his world view and exposing him to different cultures. He learned that culture is important in all aspects of daily life. In retrospect, perhaps it is no surprise that he is currently studying an iconic tree and how culture has driven attitudes toward its restoration.

Josh participating in a Fijian traditional village celebration and homestay–taking turns playing guitar.

Josh became interested in ecology, biology, and the interface of the two with humans while working for Q4 International Marketing an ecotourism company in Panama. This lead him to pursue a Master’s in Natural Resources with a marine ecology focus from Virginia Tech. However, his most recent work withOregon Parks and Recreation Department lead him to pursue a PhD at Oregon State University. With the State Parks, Josh conducted surveys in Oregon Parks and sought to connect behavior, impacts, and social science to ecology and recreation. Now at Oregon State University, Josh is working with Mark Needham andGlenn Howe to understand the drivers of attitudes toward using biotechnologies for restoring American chestnut trees.

Hear more about Josh’s research and his journey to now this week on Inspiration Dissemination. Tune in to KBVR Corvallis 88.7FM on Sunday July, 30 at 7 pm, or live stream the show.

The post Ways and Means: Attitudes Toward Methods of Restoring American Chestnut Trees appeared first on Inspiration Dissemination.

Unearthing the Unseen: Identifying drivers of fungal diversity in Panamanian rainforests

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When our roommates or family members get sick, we try to keep our distance and avoid catching their illness. Plants get ‘sick’ too, and in the natural world, this may actually explain the coexistence and diversity of plant species that we see.

Coexistence

Species coexistence relies on competition between individuals of the same species being larger than competition between individuals of different species. Competition between individuals of the same species must be large enough to keep any species from taking over and outcompeting all other species in the community. However, more recent work has highlighted the role of natural pathogens. Stable coexistence of many species may be favored if individuals of one species cannot live in close proximity to each other due to disease.

Plant Pathogens and Biodiversity

View looking south from the canopy tower at the Gamboa Rainforest Resort over the confluence of the Panama Canal and the Chagres River near Gamboa, Panama.

For example, picture a crowded forest with many adult trees of the same species releasing wind-dispersed seeds (like the helicoptering seeds of a maple). Very few, if any, of the seeds that fall near to the adult trees will germinate and reach maturity. As you walk away from the clump of adult trees, you will begin to find more germinated seeds that reach maturity (Augspurger 1983). These seeds are farther from tough competitors of the same species (adult trees) and are away from the plant pathogens that may be living in the adult root system. In our hypothetical forest, the plant pathogens that feed on young maples are keeping maple from dominating the forest, allowing other species that aren’t affected by the pathogen to thrive; in this way, plant pathogens play a role in the maintenance of biodiversity.

Drivers of Biodiversity

Our guest this week, Tyler Schappe, studies interactions among plants and fungi in the Neotropical forests of Panama. Tyler is broadly interested in what drives the maintenance and diversity of fungal communities, and how this, in turn, can affect tree communities. Tyler spent the summer of 2015 collecting 75 soil cores from three forest plots in Panama. Using DNA sequencing with universal genetic markers, he was then able to identify the fungi within the soil cores to species and functional group (decomposers, pathogens, plant mutualists, etc.). So far, Tyler has found that tree communities and soil nutrients affect the composition and diversity of fungal guilds differently. As expected, guilds that form mutualistic relationships with trees are more strongly correlated with plant communities. Interestingly, soil properties influence the species composition of all fungal guilds, including plant pathogens, pointing to the mediating role of soils as an abiotic filter. Overall, Tyler’s results, along with other research, show that soil fungal communities are an integral component of the plant-soil relationship since they are driven by, and can affect, both. Together, plants, soil, and fungi form a tightly connected three-way relationship, and wanting to understand one of them means having to study all three together.

Tyler’s work with fungal communities in Panama sheds light on belowground interactions and their implications for plant ecology. His research is one piece of evidence that may help us to understand why there are so many plant species, how they coexist, and why some species are common and some are rare. Are plant pathogens significant contributors to species richness and biodiversity? If so, what modulates plant pathogens, and how can that indirectly affect tree communities? To find out more about Tyler’s work check out these two sources from the Journal of Ecology and Science.

Spend sugar to make sugar

Stand of bur oak trees in a remnant oak savanna at Pheasant Branch Conservancy near Middleton, WI in early winter.

At a young age, Tyler began to realize how connected the world was and how plants and animals function in an ecosystem. The functioning of organisms and of ecosystems came into focus for him while in college at University of Wisconsin-Madison. He took a course in plant ecology from Dr. Tom Givnish who described plants in terms of economic trade-offs. For example, energy invested by plants in vertical growth cannot be invested in defense or reproduction; different allocations of resources can be more or less advantageous in different environments. Tyler decided to pursue graduate school at Oregon State while completing a fellowship with the Smithsonian Tropical Research Institute in Panama, where he met his current advisor, Andy Jones.

Tyler is defending his Master’s thesis August, 29 2017!  We are glad he can make time to talk with us on Inspiration Dissemination this Sunday August, 13 at 7 pm. Not a local listener? Stream the show live!

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Characterizing off-channel habitats in the Willamette River: Fish need to cool off too!

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During the summer, when the mercury clears triple digits on the Fahrenheit scale, people seek out cooler spaces. Shaded parks, air conditioned ice cream parlors, and community pools are often top places to beat the heat. If you’re a resident of Corvallis, Oregon, you may head downtown to dip your toes in the Willamette River. Yet while the river offers a break from the hot temperatures for us, it is much too warm for the cold water fishes that call it home.

Where do fish go to cool off?

As a master’s student in the Water Resources Graduate Program at Oregon State University, Carolyn Gombert is working to understand where cold water habitat is located along the Willamette River. More importantly, she is seeking to understand the riverine and geomorphic processes responsible for creating the fishes’ version of our air conditioned ice cream parlors. By placing waterproof temperature loggers along sites in the upper Willamette, she hopes to shed light both on the temporal and spatial distribution of cold water patches, as well as the creation mechanisms behind such habitats.

 

The cart before the horse: seeking to reconcile science and policy

Because the Willamette Basin is home to Cutthroat trout and Chinook salmon, the river is subject to the temperature standard adopted by the state of Oregon in 2003. Between May through October, Cutthroat and Chinook require water cooler than 18 degrees Celsius (64.4 degrees Fahrenheit). Currently, the main channel of the Willamette regularly exceeds this threshold. The coolest water during this time is found in side channels or alcoves off the main stem. While Oregon law recognizes the benefits these “cold water refuges” can provide, our scientific understanding of how these features change over time is still in its early stages.

Emerging stories

Data collection for Carolyn’s project is slated to wrap up during September of 2017. However, preliminary results from temperature monitoring efforts suggest the subsurface flow of river water through gravel and sediment plays a critical role in determining water temperature. By pairing results from summer field work with historical data such as air photos and laser-based mapping techniques (LiDAR) like in the image below, it will be possible to link geomorphic change on the Willamette to its current temperature distributions.

Between 1994 and 2000, the Willamette River near Harrisburg, Oregon shifted from a path along the left bank to one along the right bank. This avulsion would have happened during a high flow event, likely the 1996 flood.

No stranger to narratives

Prior to beginning her work in hydrology at OSU, Carolyn earned a bachelor’s in English and taught reading at the middle school level. Her undergraduate work in creative writing neither taught her how to convert temperature units from Fahrenheit to Celsius nor how to maneuver in a canoe. But the time she spent crafting stories did show her that characters are not to be forced into a plot, much like data is not to be forced into a pre-meditated conclusion. Being fortunate enough to work with Stephen Lancaster as a primary advisor, Carolyn looks forward to exploring the subtleties that surface from the summer’s data.

If you’d like to hear more about the results from Carolyn’s work, she will be at the OSU Hydrophiles’ Pacific Northwest Water Research Symposium, April 23-24, 2018. Feel free to check out past Symposiums here. Additionally, to hear more about Carolyn’s journey through graduate school, you can listen to her interview on the Happie Heads podcast.

Carolyn conducting field work on the Willamette.

Carolyn Gombert wrote the bulk of this post, with a few edits contributed by ID hosts.

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To code or not to code: the way forward for machine learning

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In a rapidly changing word of technology and engineering advancements, we’re reminded of Charles Darwin’s words it’s not the strongest that survive, but the most adaptable. For humans this means learning from our errors, one painful mistake at a time, and fixing our approach so we do not stumble again. We’re limited by our personal experiences so we can only adapt once we approach a problem; but by then it may be too late. Imagine having the collective wisdom and understanding of everyone’s experiences so that you know how to solve problems you’ve never seen before. This is the beauty of machine learning.

 

Behrooz hanging out in front of the Magnolia’s in the MU

If you haven’t heard of machine learning, then it’s just a matter of time. These techniques are already involved in highly complex board games, advertising optimization, and especially self-driving cars. It’s difficult to say how impactful machine learning will be to our everyday lives because the applications of this field are still being discovered. One of the primary foundations of machine learning is researching how computers interpret visual information so computers can make on-the-fly adjustments to stop for a pedestrian or speed up to merge on the freeway.

Behrooz Mahasseni recently finished his Ph.D. in Electrical Engineering and Computer Science where his research focused on how computers interpret video recordings. As part of his research, he worked on a project to analyze football videos to identify specific patterns like huddles, punts, and special teams plays. This is specifically useful for football recruiters who don’t have time to watch 3.5-hour football games when they’re looking for a good wide-receiver for their team. Behrooz’s work helps the computer understand when passing plays occurred so the football recruiter can watch the ‘highlights’ reel for five minutes and get all the information they need to make a hiring decision. This seems rather easy, but Behrooz worked on this for high school football games where the video is not in high definition, from an oblique angle instead of a birds-eye-view, and probably has a very excited parent-videographers jumping up and down for major plays. Obviously teaching a computer to understand videos is easier said than
done, but Behrooz was able to get all this accomplished with a high degree of accuracy that helped him land a job with Apple. He’s described this job as research and development using the skills he learned in graduate school (that’s about all he can say) but it took him many years of school to finally realize he had the skills to act
as the spearhead of technological innovation.

Behrooz’s family including his wife Mitra and Behrad celebrating the Persian New Year March 2016

There is so much more to discuss with Behrooz, especially about where the field of machine learning and artificial intelligence is moving. We will also discuss his first experience with a robotic competition in Tehran, his decision to move to the United States, and his never-ending drive for finding and solving new problems. Be sure to listen in Sunday September 3rd at 7PM on 88.7 KBVR Corvallis!

The post To code or not to code: the way forward for machine learning appeared first on Inspiration Dissemination.

The Grape Depression: Powdery Mildew in Willamette Valley Vineyards

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Brent at the Foliar Pathology Lab research vineyard where the small plot field trials in his project were conducted.

Viticulture is the science, production, and study of grapes, and when growing grapes for wine both quantity and quality matter. One challenge facing farmers in the Willamette Valley is a plant pathogen: grape powdery mildew. This pathogen can live in a field year-round and emerges to infect grape leaves, flowers and fruits annually. Grape plants infected with powdery mildew suffer low berry yields and mildew may affect the taste of wine. In the Willamette Valley, where vineyards abundant, grape powdery mildew is a big problem. Brent Warneke, a Master’s student in the department of Botany and Plant Pathology, is studying the effect of fungicide application timing on the reduction in severity of powdery mildew on grapes, and he is our guest on Inspiration Dissemination this week.

Moldy Grapes

A grape bunch severely infected with powdery mildew. Note the berry cracking, powdery appearance, and poor color accumulation.

Brent works at the USDA Horticultural Crops Research Lab with Walt Mahaffee, and his research tests the effect of fungicide application timing on grape powdery mildew control. Timing fungicide applications is especially crucial during the one to three-week window of grapevine flowering. Optimal fungicide application timing can slow the mildew epidemic allowing grape berries to mature and become less susceptible to powdery mildew. Across the Willamette Valley, fungicide application to grapes is a well-known prevention solution for powdery mildew, but less is known about the best fungicide to use and when to spray plants during berry development. The findings of his research are now being validated at a larger scale in commercial vineyards. In the lab, Brent is also studying the mobility of fungicide “through the grapevine,” from tissue to tissue through the air and xylem, and Brent is helping with a project to identify strains of mildew resistant to commonly used fungicides.

 

The Grape State of Colorado 

Brent with a harvest of varnish conk (Ganoderma oregonense), Lobster mushroom (Hypomyces lactifluorum).

Brent hails from Colorado where he spent his early years outside gardening, snowboarding, and hiking. During undergrad at Colorado State University (CSU), Brent majored in Horticulture and held research positions at the Center for Agricultural Resources Research and the Bioenergy Lab. Among his many projects during undergrad, Brent completed a senior thesis project, under the direction of Dr. Courtney Jahn, developing a LAMP-PCR to diagnose Canada thistle rust on infected plants that were not displaying symptoms.

Wine Not?

While at CSU, Brent also began studying viticulture. He liked the challenge and complexity of growing grapes for wine. Brent chose to pursue graduate school at Oregon State because his current program blends plant pathology with viticulture. He’s happy with his decision because Oregon is similar to Colorado for outdoor recreation, not to mention its world class Pinot Noir!

Hear more from Brent this Sunday September, 10 at 7PM on KBVR Corvallis, 88.7FM! Not a local listener? Not sweat! Stream the show live.

Brent on top of South Sister (10,363 ft). Middle and north sister can be seen in the immediate background. In the far background the small peak to the left without snow is Mount Washington , then Mount Jefferson behind north sister and Mount Hood in the background to the right of North Sister.

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Breaking the Arctic ice

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When you hear about fractures in sea ice, you might visualize the enormous fissures that rupture ice shelves, which release massive icebergs to the sea. This is what happened back in July 2017 when a Delaware-sized iceberg broke off from the Larsen C ice shelf in Antarctica. However, there are other types of fractures occurring in sea ice that may be impacted by atmospheric conditions. Our guest this week, CEOAS Masters student Ben Lewis investigates how interactions between the atmosphere and sea ice in the Beaufort Sea (north of Alaska in the Canadian Archipelago) impact the formation of fractures. His research involves mapping atmospheric features, such as wind and pressure, at the point in time when the fractures occurred and provides insight into the effect of the atmosphere on the formation and propagation of fractures. Utilizing satellite imagery compiled by the Geographical Information Network of Alaska from 1993 to 2013, Ben has conducted a qualitative analysis to determine the location and time when these ice fractures occurred and what type of physical characteristics they possess.

While fractures appear small on the satellite image, the smallest fractures that Ben can observe by are actually 250 meters wide. Fractures can span hundreds of kilometers, and the propagate very quickly; Ben cites one example of a fracture near Barrow, Alaska that grew to 500 kilometers within 6 hours!

Fractures are potentially deadly for people and animals hunting in the Arctic. As weather flux in the fragile Arctic ecosystem has become more erratic with climate change, it has been difficult for people to predict when it was safe to hunt on the ice based on patterns observed in prior seasons. Additionally, it has been problematic to track weather in the Arctic because of its harsh conditions and sparse population. A well-catalogued record of weather is not available for all locations. Modeling atmospheric conditions, such as pressure and wind, based on what has been captured by satelliteimagery, will facilitate better prediction of future fracture events.

While pursuing an undergraduate degree in physics at the University of Arkansas, Ben was able to study abroad James Cook University in Australia, where he gravitated towards environmental physics, while taking advantage of incredible opportunities for nature photography. He also did a semester abroad in New Zealand, where he studied geophysical fluid dynamics and partial differential equations. Ben came to OSU as a post-baccalaureate student in climate science, and while at OSU, he became acquainted with his future PI, Jennifer Hutchings,  and his interest in Arctic research grew. He cites learning about snowball earth, glaciology, and the cryosphere, as providing the basis for his desire to pursue Arctic climate research. Eventually, Ben would like to pursue a PhD, but in the immediate future, he plans to keep his options open for teaching and research opportunities.

 

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Studying skeletal muscle physiology to better understand diseases such as type II diabetes

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Harrison in the lab.

Our guest this week on Inspiration Dissemination, Harrison Stierwalt a PhD student in Kinesiology, studies the cellular mechanisms of skeletal muscle physiology. Harrison and other members of the Translational Metabolism Research Laboratory, research the cause of skeletal muscle insulin resistance and how exercise acts against insulin resistance. In particular, Harrison currently studies the activity of a protein called Ras-related C3 botulinum toxin substrate 1, or more commonly known as Rac1. Rac1 plays an important role in the regulation of blood sugar in response to insulin being released from the pancreas following a meal. Insulin is a hormone that triggers the uptake of sugar from the blood stream into skeletal muscle cells where it can be stored or metabolized into energy. In states of insulin resistance, individuals still produce insulin, but eventually insulin resistance leads to chronically increased blood sugar levels. Insulin resistance puts individuals at predisposition for cardiovascular disease, cancer, and type II diabetes. Previous research has demonstrated decreased Rac1 activity in states of insulin resistance but the cause for its decreased activity is unknown.

Harrison working with the oxygraph doing high resolution respirometry (used to measure mitochondrial respiration).

Studying Rac1

The activation of Rac1 causes reorganization of cell components creating “highways” that allow other proteins such as glucose transport 4 or GLUT4 to relocate to the cell membrane and allow sugar from blood to enter skeletal muscle cells for processing. Consequently, Rac1 shows increased activity in response to insulin and exercise promoting the metabolism and storage of sugar in skeletal muscle. Harrison suspects that the dysfunction of Rac1 may play a large role in  insulin resistance, and his lab is looking to better understand the dysfunction of skeletal muscle physiology that may contribute to insulin resistance. To study insulin resistance, Harrison is currently comparing Rac1 activity in skeletal muscle cells and skeletal muscle tissue of lean and obese mice. Learn more about Rac1, GO TO ARTICLE.

Harrison has always been drawn to human health, and is particularly intrigued by how adaptable the human body is. He completed his undergraduate degree and Master’s in Exercise Science at Florida State University. After, he worked as a strength and conditioning coach, testing physical performance. While this work was challenging, Harrison decided to pursue a PhD so that he could ask his own research questions about human health and investigate cellular mechanisms therein.

Harrison encouraging a participant during an exercise test.

With a growing interest in metabolism and physiology, Harrison began looking for Kinesiology PhD programs. He discovered the work of his co-advisors, Sean Newsom and Matt Robinson. For Harrison, Oregon State is a good fit that encapsulates his interested: exercise science, molecular cellular biology, and human health. Harrison is starting the second year of his PhD in the College of Public Health and Human Sciences.

If you are interested in participating in human health research, visit the Newsom-Robinson lab webpage.

Tune in this Sunday September 24 at 7 PM to learn more about Harrison and his research with insulin resistance and sugar metabolism. Not a local listener? No sweat! Stream the show live!

Mountain biking at Black Rock in Falls City, Oregon.

Harrison at the peak of South Sister, 2017.

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Safe nuclear power & its future in our energy portfolio

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Independent of your professional career choice, the demand for energy and our ability to provide enough energy for the world is set to become a limiting factor for human development. Complicating the energy issue, a Pew Research survey from 2016 found ¾ of US adults agree that “the country should do whatever it takes to protect the environment”. A sobering statistic from the US Energy Information Administration projects a nearly 30% increase in world energy demand by 2040; as expected the fastest expansion of energy production is concentrated in renewables where coal demand is expected to flat line. As you can imagine the renewable energy sector has become a horse race of optimism but there are unfortunate downsides our current energy portfolio.

Hydroelectric dams physically change landscapes and limits fish migration; solar and wind power are not terribly efficient, non-constant throughout the day, and the space required for these facilities usually has negative consequences on land mammals and avian species. Nuclear energy is often immediately associated with nuclear weapons and disasters like Chernobyl and more recently Fukushima. Nobody disputes the efficiency or the fact that it’s currently responsible for 2/3 of our carbon-free energy but it does suffer from negative public perception that this method of energy production is unsafe. Today’s guest will help provide some guidance on the current state of the science, it’s safety, and why it could be the best energy generation option the US and developing countries.

Dylan Addison received his Masters Degree in Mechanical Engineering from OSU where he focused on how materials, especially those used in nuclear reactors like nickel-based alloys, respond to deformation and fractures processes to make them stronger, more robust, and essentially making nuclear power generation safer. Once graduating, Dylan quickly transition to work with NuScale Power here in Oregon where he continues to investigate the fracture mechanics of materials exposed to very high temperatures and pressures associated with nuclear power generation to make them as safe as possible.

There are many reasons why you should keep track of NuScale Power in the coming years. In addition to being a local company, they’re influencing industry to integrate passive safety mechanisms in reactor designs so that in the event of a power outage or other failure, there is no human intervention required in order for the reactor to quickly cool down and remain safe to its surroundings. So long as the materials in the system are able to deal with the thermal stress, as studied by Dylan, there will no longer be any more Fukushima or Chernobyl-style meltdowns.

Although Dylan is at the forefront of these scientific advancements, his path to Oregon State dabbled in many fields. His initial exposure to the business field was a health-product company he started while still in dorm room simultaneously studying the art of rhetoric, he touched on selling company training modules over the phone but ultimately decided he wanted to return to the field of mechanical engineering that constantly present technical challenges that Dylan loves solving.

Be sure to tune in Sunday October 1st at 7PM on 88.7FM or live to hear more about how his schooling at Oregon State has positioned him to be a leader in technological innovation and help us problem solve for our energy woes.

Author’s Note: The views and opinions expressed in this blog and radio episode are those of the hosts and their guests which do not necessarily represent OSU, NuScale Power, or KBVR FM.

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Clean Meat, Clean Conscience

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Some may say, “there is nothing like a juicy hamburger,” and here is the USA we are fortunate to have access to affordable meat. While the cost of your next hamburger may not weigh too heavily on your pocket, the quantity resources required to produce one pound of beef may surprise you. One pound of meat is fed by nearly 7 pounds of grain, 53 gallons of water, 70 square acres of land, and 1,000 BTU of energy(The Meat Revolution- Mark Post). Additionally, animal agriculture produces 5 times the amount of greenhouse gasses than other food sources (Smithsonian Mag). Finally, 56 billion land animals are killed every year solely for food. The impacts on marine animals are high as well but difficult to estimate. More information about the impacts of animal agriculture. But what can be done? Is there a better way to grow meat that uses less resources and reduces animal suffering?

From the petri dish to the plate

Bjørn on the Oregon State University campus

Yes, our guest this week, Bjørn Kristensen from the School of History, Philosophy, and Religion, studies the ethics behind cultured meat or clean meat. Similar scientific advances in muscle tissue culture that have led to lab grown human organs are now being harnessed to grow animal muscle for human consumption. Clean meat is made from cells that can be obtained with no harm to the animal donor. One company, Hampton Creek Foods, has cultured chicken muscle with cells from a chicken feather. Hampton Creek Foods and Finless Foods are focused on producing clean meat with zero animal suffering. Clean meat is literally clean because it is grow under 100% sterile conditions. This means no natural parasites or other infections, and no need for antibiotics nor artificial growth hormones. While Bjorn maintains that the best option for the both purposes of sustainability and reduction in animal suffering is eliminating animal products from one’s diet, within the next year or two, companies such as Hampton Creek and Finless Foods will be introducing clean meat which is structurally identical to meat coming from mainstream animal agriculture. This means that even those who choose not to stop eating meat will have options that do not require an animal to be killed for their food.

The best part: by some estimates a few animal cells can be used to grow 10,000 kg of meat (The Meat Revolution- Mark Post). Practically speaking, clean meat could reduce the number of cows in animal agriculture from half a billion to thirty thousand. This reduction animal agriculture would free up land and resources for other food sources such as vegetable crops, lessen the amount of greenhouse gasses being emitted by animal agriculture, and it would lower animal suffering.

When practicality meets ethics

Bjørn with a resident of Green Acres Farm Sanctuary in Silverton, Oregon where he volunteers.

Animal agriculture is an ethical issue. The intersection occurs when humans act as mediator and place the needs of one species over the needs of another. Bjorn studies this ethical conundrum. In the case of animal agriculture,we have placed our desire for meat over the needs of the individual animals within the current food system. For these animals, their entire life is planned for their death, process, and consumption, and this planned “life” comes with emotional consequences for the animals. Check out this video about chickens, considered one of the most abused animals. Clean meat could alleviate the need for so much animal suffering to feed humans and other non-human animals.

Not convinced?

Bjørn with his dog, Thor.

Consider this: humans are not the only animals on the planet that consume meat from animal agriculture. While humans can actually survive and thrive on a plant-based diet, other carnivorous animals must consume flesh to survive. Pets, zoo animals, and wildlife in rehabilitation also require animal proteins, and the animals that are harvested to produce pet food are at the bottom of the food chain. Removing small fish or small rodents from natural ecosystems means that animals in the wild have to get energy from other sources. For some wild animals, such as marine mammals, this is simply not possible. Few have considered that clean meat could become an alternative protein source for pets and other wildlife that have been removed from their natural habitat. Bjørn explored the ethics of “captive predation” or feeding captive animals with other animal protein sources in a recent paper that he presented at the International Conference on Cultured Meat in Maastricht, the Netherlands.

Because it’s who you are

Receiving the award for outstanding philosophical essay from his undergrad professor, Antony Aumann.

Bjørn’s “when I grow up” career choice was a veterinarian, and although not a vet now, his concern for animals has not dwindled. During college, Bjørn started out as a Human Services major at Finlandia University, but switched his focus after taking some philosophy and religious studies classes. Eventually, he transferred to Northern Michigan University and found a connection between concern for animals and philosophical study, particularly in animal ethics.  Bjørn began to consider graduate school after his professor in existentialism, Anthony Aumann, encouraged him to apply. Bjørn applied toOregon State University, and began to develope his thesis concerning inter-species justice with Robert Figueroa his major advisor.

Hear more about clean meat and Bjørn’s work and journey to graduate school this Sunday October, 8 at 7pm on 88.7FM KBVR Corvallis. Listen live online anywhere!

Continue the conversation with Bjørn and learn more about clean meat ethics and research:

 on twitter

kristenb@oregonstate.edu

 

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The Breathing Seafloor

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In the cold, dark depths of the seafloor across the world, microbes living in sediments and on rocks are quietly breaking down organic material and sucking dissolved oxygen out of the seawater. The continental shelf off of Oregon’s coasts, home to a fishing industry that brings in over a hundred million dollars of revenue per year, is no exception. Does oxygen consumption, and therefore carbon cycling, vary by location, or across seasons? Setting a baseline to investigate these patterns of oxygen drawdown is crucial to understanding habitats and distributions of fish stocks, but will also establish what “normal” oxygen consumption looks like off our shores. Measurements like these are also used by the Intergovernmental Panel on Climate Change (IPCC) to estimate global patterns of carbon burial. If any forces were to shift these patterns in the future, we’d at least have a baseline to allow us to diagnose any “abnormal” conditions.

Peter Chace is a third-year PhD student of Ocean Ecology and Biogeochemistry in the College of Earth, Ocean, and Atmospheric Sciences (CEOAS). Peter’s research focuses on developing a technique of measuring fluxes of oxygen across the seafloor called Eddy covariance. This technique takes high-resolution time measurements of three-dimensional velocities of water moving in turbulent whorls, or random circular patterns, within the boundary layer of a fluid like air or water. Eddy covariance has been employed to measure fluxes across air layers on land for decades, but has only recently been applied in marine systems. A point-source oxygen measurement within this turbulent layer is measured with a microelectrode and combined with the velocity data to develop a flux. Why go through all this trouble? Other ways to measure oxygen fluxes, like putting chambers over an area of seafloor and waiting to measure an oxygen drawdown, require a lot of work and give little temporal resolution.

Workers on the RV Oceanus, Oregon State’s largest research vessel, deploy a benthic (seafloor) oxygen sensor.

Peter can calibrate his microelectrodes to measure other chemicals and obtain their fluxes across the seabed, but he is mainly focused on oxygen. To measure fluxes off the Oregon coast, Pete and his advisor, Dr. Clare Reimers, will head to sea on the RV Oceanus several times this fall and winter to deploy their sensor on the seafloor for days at a time. The desk-sized seafloor lander and the microelectrode attached to it are fragile, and the rough seas offshore Oregon in fall and winter will make it a challenging endeavor. We hope they pack enough seasickness medication and barf bags!

You get right up close and personal with the ocean when you send down these instruments… and this is on a clear day with calm seas!

Since growing up as a child in New Jersey, Peter has always wanted to learn about the ocean. While studying chemistry and marine biology at Monmouth University (in New Jersey) as an undergraduate, he completed a summer REU (Research Experience as an Undergraduate) with his current advisor, Clare Reimers, here at Oregon State University. He also interned for NOAA (the National Oceanic and Atmospheric Association), analyzing the chemistry of hydrothermal vent fluids with Dr. David Butterfield. Pete revisited a hydrothermal system on a cruise to the East Pacific Rise off of Central America where he got a remarkable opportunity to dive in Alvin, the submersible that discovered the wreckage of the Titanic.

Here’s Pete in the submersible Alvin just before the dive, checking his microelectrodes.

To hear more about Peter’s research on sensor development and his seafaring expeditions, tune in to Inspiration Dissemination on Sunday, October 15th at 7pm on 88.7 KBVR Corvallis. Or stream it online here!

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Tracing Goethe’s influence on botany and plant morphology

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As a History of Science PhD student in the School of History, Philosophy, and Religion, Andy Hahn studies how botanists and plant morphologists in the 20th century were influenced by Goethe, a famed German writer and naturalist during the 19th century. Goethe is well known for his rendition of Faust, as well as his novel, The Sorrows of Young Werther. Although historians and philosophers have studied Goethe extensively, his influence on subsequent generations of botanists and plant morphologists has not been fully explored. Goethe wrote a book called Metamorphosis of Plants, which provided early foundational insight into morphology, the study of plant structure and appearance of plant features such as leaves and petals. For his PhD work, Andy has visited institutional archives in Switzerland, England, and Scotland to study the letters and writings of 20th century botanists and other scientists influenced by Goethe’s science.

Goethe’s science was characterized by taking account appearance and structure of plants as a whole entity, as opposed to focusing only specific parts of the plant, a method employed in the taxonomy of Linnaeus, a prominent 18th century natural historian. As the 19th century progressed, Goethe’s approach towards morphology was well-integrated in botanical science in Germany, France, and England. However, the rise of Darwinism, genetics, and experimental methods in the late 19th and early 20th centuries was accompanied by a decreased role for Goethe’s style of morphology. In the early 20th century, plant morphologist community split into two groups: new morphology based in Darwinian thought, and old morphology based in Goethe’s principles. The influence of Goethe’s writing can be seen among botanists in the 20th century, including Agnes Arber, a plant morphologist who translated Goethe’s Metamorphosis of Plants into English.

Andy was introduced to Goethe’s scientific work as he continued to follow his interests that arose from his as an undergraduate in philosophy. He appreciated Goethe’s and current Goethean scientists’ approach to plant morphology as a means to understand the natural world. By visualizing a plant through the course of its life, he was able to develop a stronger connection to the natural world, awakening his own senses by meditating on the form of plants. Andy found himself wondering what happened to the ideas of Goethe, and why Goethe’s ideas weren’t recognized more commonly in biological education. He became interested in philosophical questions surrounding why we think the way we do, as well as the accumulation of knowledge; in particular, how we produce scientific knowledge, and how we can be certain about it. During his Masters studies at OSU, Andy first began researching the botanical work of Goethe, and has continued to study the influence of Goethe on 20th century botanists for his PhD work. Following completion of his graduate studies, Andy would like to teach history of science at the university level and pursue science writing.

To hear more from Andy about the influence of Goethe’s science on botany and plant morphologists, tune in to Inspiration Dissemination on Sunday, October 22 at 7pm on 88.7 KBVR Corvallis. Or stream it online here!

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Secrets of the Black Cottonwood

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Ryan cultivated his interest in plants at a young age while checking wheat fields with his dad on the family farm near Beltrami, MN.

Growing up on a family farm in North Dakota, Ryan Lenz loved learning about wheat – specifically the things that made wheat varieties different. Why were some taller or shorter than others? Why did some have more protein? After gaining skills in molecular biology at North Dakota State University with a Bachelor of Science in Biotechnology, Ryan interned with a biotech company where he was finally able to make the connection between wheat varieties and the genes that make them different. This experience sparked his interest and led him to earn a Master’s degree in Plant Sciences at his alma mater and eventually brought him to OSU’s Department of Botany & Plant Pathology to study host-pathogen interactions as a PhD student with Dr. Jared LeBoldus.

Using black cottonwood (Populus trichocarpa) – a native tree to the western US – Ryan is working to reveal the genes responsible for making woody plants susceptible to fungal disease and those that give the fungus the ability to infect trees. The fungus of interest, Sphaerulina musiva, causes leaf spot and stem canker on cottonwood trees – the latter disease being more severe as it girdles the trees and causes the tops to break off.

Ryan tending to his tissue culture plants in the LeBoldus Lab.

The fungal pathogen was first found in the eastern United States in association with the more resistant eastern cottonwood (Populus deltoides), but has worked its way westward putting the susceptible black cottonwood at risk. This fast-growing cottonwood is a foundation species in riparian areas and provides erosion control. Not only are these trees important ecologically, they are also important in forest agriculture for their uses in making pulp for paper, biofuels, building materials, windbreaks, and for providing shade.

Ryan and his wife, Rebecca, enjoying the beautiful Pacific Northwest.

To learn how the tree and fungus interact, Ryan employs advanced molecular techniques like the CRISPR-Cas9 system to edit genes. To put it simply, he tries to find the important information in the plant and fungus by making changes in the genetic code and then seeing if it has a downstream effect. The implication of his work has two sides. On one hand, Ryan is trying to provide cottonwood breeders with insight to make a more resistant tree to be grown in the western US. While on the other hand, he is working to establish the black cottonwood as a model system for other woody hosts susceptible to necrotrophic fungi – those that feed on dead tissue. As a model system, the secrets of the black cottonwood would be unveiled, providing a blueprint of valuable information that could be applied to other woody trees.

 

One day, Ryan hopes to move back to the Midwest to be a plant researcher near his family’s farm.

Join us on Sunday, November 5, at 7 PM on KBVR Corvallis 88.7 FM or stream live to learn more about Ryan’s love for plant genetics and his journey to graduate school.

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GROWing Healthy Kids and Communities

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Physical activity has many benefits for health and wellness. Physical activity can help us control our weight, reduce our risk of diseases including many cancers and type 2 diabetes, help to strengthen our bones and muscles, and improve our mental health. Yet despite the benefits, many don’t get the recommended amount of physical activity. Our guest this week, Evan Hilberg from the College of Public Health and Human Sciences and the Department of Kinesiology, is investigating factors that influence physical activity of children in rural communities. Research focused on physical activity in children disproportionally centers around children in urban communities. Children in rural communities may have different limitations to physical activity. For example, rural children are more likely to take the bus to school instead of walking and commutes may take up to two hours each way. This leaves little time for physical activity outside of school hours. With his advisors, John Schuna and Kathy Gunter, Evan is analyzing data collected as part of the Generating Rural Options for Weight- Healthy Kids and Communities (GROW HKC) to better understand when children are active during the school day and factors that might limit their physical activity.

Recess and Wellness

Evan taking blood samples for cholesterol and glucose testing at a Community Wellness Fair.

One area of interest for Evan and the GROW HKC project are the variables that may predict changes in Body Mass Index (BMI) over a three-year period. Through this longitudinal study that involves over 1000 rural Oregon elementary school children, Evan will identify correlates of BMI change such as physical activity levels, age, sex, teacher, and school. Additionally, Evan is analyzing data that will hopefully provide more insight into specifically what times during the school day children are active. By obtaining a classroom schedule from teachers and measuring activity with accelerometers and pedometers, Evan can infer if children are physically active during recess, P.E., classroom activity breaks, or other times during the school day. Finally, Evan’s data will examine the reliability of different objective measures of physical activity, such as pedometers and accelerometers. The ability to compare outputs from different devices is limited by changes in device hardware and software, as well as the ways in which data is processed within those devices. The examination of these devices may inform procedure for future physical activity research for children and adults to help comparability across different devices and different studies.

A School of Thought

A clear understanding of the factors effecting physical activity in rural school children will aid in structuring the school day to maximize each child’s opportunity to be physically active. Data generated through GROW HKC my reveal patterns that younger children are more active during unstructured play during recess, whereas older children prefer sports-focused activity in P.E.. This type of research could inform recommendations for state-mandated physical activity at schools such that school day structure and physical activity opportunities are tailored to the diverse needs of kids in rural communities.

Full Circle

Evan grew up as an active kid and selected a college where he could play baseball. He landed at Linfield College in McMinnville, Oregon where his interest in Exercise Science grew through volunteering in community health outreach and research with his advisor, Janet Peterson. Evan learned that his education went beyond the classroom through his interactions with the community. Evan decided to pursue graduate school and earned a Master’s degree in Exercise Physiology from Eastern Washington University. During his Master’s, Evan gained more experience with community and public health research as an AmeriCorps employee with Let’s Move, Cheney”, a local coalition inspired by Michelle Obama’s national campaign. Thereafter, Evan volunteered with the GROW HKC project, and applied to graduate school at Oregon State. Since beginning his doctoral studies with a concentration in physical activity and public health, Evan has completed a Master’s in Public Health in Biostatistics and maintains a full-time job as a Medical Policy Research Analyst with Cambia Health Solutions.

Tune in to 88.7 FM KBVR Corvallis this Sunday November, 12 at 7 pm to hear more about Evan’s research and background in Exercise Science. Click here to stream the show live.

Evan at the California-Oregon border on a self-supported bike trip to San Francisco down the coast.

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Ocean basins are like trumpets– no, really.

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We’re all familiar with waves when we go to the coast and see them wash onto the beach. But since ocean waters are usually stratified by density, with warmer fresher waters on top of colder, saltier ones, waves can occur between water layers of different densities at depths up to hundreds of meters. These are called internal waves. They often have frequencies that are synched with the tides and can be pretty big–up to 200 meters in amplitude! Because of their immense size, these waves help transfer heat and nutrients from deep waters, meaning they have an impact on ocean current circulation and the growth of phytoplankton.

The line of foam on the surface of the ocean indicates the presence of an internal wave.

We still don’t understand a lot about how these waves work. Jenny Thomas is a PhD student working with Jim Lerczak in Physical Oceanography in CEOAS (OSU’s College of Earth, Ocean, and Atmospheric Sciences). Jenny studies the behavior of internal waves whose frequencies correspond with the tides (called internal tides) in ocean basins. This requires a bit of mathematical theory about how waves work, and some modeling of the dimensions of the basin and how it could affect the height of tides onshore.

Picture a bathtub with water in it. Say you push it back and forth at a certain rate until all the water sloshes up on one side while the water is low on the other side. In physics terms, you have pushed the water in the bathtub at one of its resonant frequencies to make all of it behave as a single wave. This is called being in a normal mode of motion. Jenny’s work on the normal modes of ocean basins suggests that the length-to-width ratio and the bathymetry of an ocean basin influence the structure of internal tides along the coast. Basically, if the tidal forcing and the shape of the basin coincide just right, they can excite a normal mode. The internal wave can then act like water in a bathtub sloshing up the side, pushing up on the lower-density water above it.

It turns out that water isn’t the only thing that can have normal modes. The air column in a wind instrument is another example. Jenny grew up a child of two musicians and earned a degree in trumpet performance from the University of Iowa, and she occasionally uses her trumpet to demonstrate the concept of normal modes. She can change pitches by buzzing her lips at different resonant frequencies of the trumpet–the pitch is not just controlled by the valves.

Jenny uses her trumpet to explain normal modes.

Near the end of her undergraduate degree at the University of Iowa, Jenny discovered that she had a condition called fibrous dysplasia that could potentially cause her mouth to become paralyzed. Deciding a career as a musician would be too risky, and realizing her aptitude for math and physics, she went back to school and earned a second undergraduate degree in physical oceanography at Old Dominion University. After a summer internship at Woods Hole Oceanographic Institution conducting fieldwork for the US Geological Survey, she decided to pursue a graduate degree at OSU to further examine the behavior of internal waves.

Tune in to 88.7 KBVR Corvallis to hear more about Jenny’s research and background (with a trumpet demo!) or stream the show live right here.

Jenny helps prepare an instrument that will be lowered into the water to determine the density of ocean layers.

Jenny isn’t fishing. The instrument she is deploying is called a CTD for Conductivity, Temperature, and Depth–the three things it measures when in the water.

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Exploring a protein’s turf with TIRF

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Investigating Otoferlin

Otoferlin is a protein required for hearing. Mutations in its gene sequence have been linked to hereditary deafness, affecting 360 million people globally, including 32 million children. Recently graduated PhD candidate Nicole Hams has spent the last few years working to characterize the activity of Otoferlin using TIRF microscopy. There are approximately 20,000 protein-coding genes in humans, and many of these proteins are integral to processes occurring in cells at all times. Proteins are encoded by genes, which are comprised of DNA; when mutations in the gene sequence occur, diseases can arise. Mutations in DNA that give rise to disease are the focus of critical biomedical research. “If DNA is the frame of the car, proteins are the engine,” explains Nicole. Studying proteins can provide insight into how diseases begin and progress, with the strategic design of therapies to treat disease founded on our understanding of protein structure and function.

Studying proteins

Proteins are difficult to study because they’re so small: at an average size of ~2 nanometers (0.000000002 meters!), specific tools are required for visualization. Enter TIRF. Total Internal Reflection Fluorescence is a form of microscopy enabling scientists like Nicole to observe proteins tagged with a fluorescent marker. One reason TIRF is so useful is that it permits visualization of samples at the single molecule level. Fluorescently-tagged proteins light up as bright dots against a dark background, indicating that you have your protein.

Another reason why proteins are hard to study is that in many cases, parts of the protein are not soluble in water (especially if part of the protein is embedded in the fatty cell membrane). Trying to purify protein out of a membrane is extremely challenging. Often, it’s more feasible for scientists to study smaller, soluble fragments of the larger protein. Targeted studies using truncated, soluble portions of protein offer valuable information about protein function, but they don’t tell the whole story. “Working with a portion of the protein gives great insight into binding or interaction partners, but some information about the function of the whole protein is lost when you study fragments.” By studying the whole protein, Nicole explains, “we can offer insight into mechanisms that lead to deafness as a result of mutations.”

Challenges and rewards of research

Nicole cites being the first person in her lab to pursue single molecule studies as a meaningful achievement in her graduate career. She became immersed in tinkering with the new TIRF instrument, learning from the ground up how to develop new experiments. Working with cells containing Otoferlin, in a process known as tissue culture, required Nicole to be in lab at unusual hours, often for long periods of time, to make sure that the cells wouldn’t die. “The cells do not wait on you,” she explains, adding, “even if they’re ready at 3am.” Sometimes Nicole worked nights in order to get time on the TIRF. “If you love it, it’s not a sacrifice.”

Why grad school?

As an undergraduate student studying Agricultural Biochemistry at the University of Missouri, Nicole worked in a soybean lab investigating nitrogen fixation, and knew she wanted to pursue research further. She had worked in a lab work since high school, but didn’t realize it was a path she could pursue, instead convinced that she wanted to go to medical school. Nicole’s mom encouraged her to pursue research, because she knew that it was something she enjoyed, and her undergraduate advisor (who completed his post-doc at OSU) suggested that she apply to OSU. She feels lucky to have found an advisor like Colin Johnson, and stresses the importance of finding a mentor who is personally vested in their graduate student’s success.

Besides lab work…

In addition to research, Nicole has been actively involved in outreach to the community, serving as Educational Chair of the local NAACP Chapter. Following completion of her PhD, Nicole intends to continue giving back to the community, by establishing a scholarship program for underrepresented students. Nicole remembers a time when she was told and believed that she wasn’t good enough, and while she was able to overcome this discouraging dialogue, she has observed that many students do not find the necessary support to pursue higher education. Her goal is to reach students who don’t realize they have potential, and provide them with resources for success.

Tune in on December 3rd  at 7pm to 88.7 KBVR Corvallis or stream the show live right here to hear more about Nicole’s journey through graduate school!

Thanks for reading!

Full Interview Here

Earlier in the show we discussed current events, specifically how the tax bill moving through the House and Senate impact students. Please see our references and sources for more information.

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It’s a Bird Eat Bird World

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Female sage-grouse in eastern Oregon, 2017. Photo credit: Hannah White

Over the last half century, populations of Greater Sage-grouse – a relative of pheasants and chickens – have declined throughout their range. Habitat loss and degradation from wildfires is regarded as a primary threat to the future of sage-grouse in Oregon. This threat is exacerbated by the spread of invasive annual grasses (read: fuel for fires). In addition, raven populations, a predator of sage-grouse nests, are exploding. But how does all of this relate? PhD student Terrah Owens of Dr. Jonathan Dinkins lab in the Department of Animal and Rangeland Sciences at Oregon State University and her colleagues are trying to find out.

Specifically, Terrah’s research is focused on the impact of wildfire burn areas – the burn footprint and edge – on sage-grouse predation pressure and how this influences habitat selection,

Terrah Owens with a radio-collared female sage-grouse in Nevada, 2015.

survival, and reproductive success. To do this work Terrah is characterizing six sites in Baker and Malheur counties, Oregon, based on their burn history, abundance of avian predators, shrub and flowering plant cover, as well as invasive annual grasses. To monitor sage-grouse populations, Terrah captures and radio-marks female sage-grouse to identify where the birds are nesting and if they are producing offspring. Additionally, Terrah conducts point counts to determine the density and abundance of avian predators (ravens, hawks, and eagles) in the area. Burn areas generally provide less protective cover for prey, making it an ideal hunting location for predators. Ultimately, Terrah hopes her work will help determine the best ways to allocate restoration funds through proactive, rather than reactive measures.

An encounter with a Bengal tiger at a petting zoo as a young girl inspired Terrah’s lifelong interest in wildlife conservation. As an undergraduate, Terrah studied Zoology at Humboldt State University in Arcata, CA. She then interned at Bonneville

Banding a juvenile California spotted owl, 2016.

Dam on the Columbia River for the California sea lion and salmon project. After this she went on to work for the U.S. Forest Service in northern California as a wildlife crew leader working with spotted owls, northern goshawk, fisher, and marten, among other species. She eventually moved on to work with sage-grouse in Nevada with the U.S Geological Survey.

After graduate school, Terrah would like to head a wildlife service research unit and apply her wealth of knowledge and government experience to bridge the gap between scientists and policymakers.

Join us on Sunday, December 10, at 7 PM on KBVR Corvallis 88.7 FM or stream live to learn more about Terrah’s research, how she captures sage-grouse, and her journey to graduate school.

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